source(paste0(root.dir, 'scripts/myRLib.R'))
funcset <- readLines(paste0(root.dir, 'output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/sig_subset.set'))
funcset <- parseFuncSet(funcset)
funcset.names <- names(funcset)
xtyi.files <- strsplit('output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e+00.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-01.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-01.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-02.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-02.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-03.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-03.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p3.0000e-04.assoc.logistic:output-direction_XT_YI/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/xtyi_LDpred_p1.0000e-04.assoc.logistic', ':')[[1]]
ps <- strsplit('1,0.3,0.1,0.03,0.01,0.003,0.001,0.0003,0.0001', ',')[[1]]
inter.files <- strsplit('output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e+00.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-01.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-01.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-02.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-02.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-03.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-03.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p3.0000e-04.assoc.logistic:output-run_step2/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/interaction.sig_subset_LDpred_p1.0000e-04.assoc.logistic', ':')[[1]]
prs.files <- strsplit('../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e+00.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-01.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-01.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-02.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-02.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-03.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-03.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p3.0000e-04.txt:../step1/output-run_step1/MAGNETIC_HDL.C__wtccc_cad__wtccc_ctrl/ldpred_LDpred_p1.0000e-04.txt', ':')[[1]]
for (i in 1:length(xtyi.files)) {
cat("##", funcset.names[i])
cat("
")
cat("
")
snp.subset <- funcset[[funcset.names[i]]]
# read I ~ SNP
prs <- read.table(paste0(root.dir, prs.files[i]), header = T)
prs$sid <- as.character(prs$sid)
prs.sub <- prs[prs$sid %in% snp.subset, ]
# read others
xtyi <- read.table(paste0(root.dir, xtyi.files[i]), header = T)
xtyi$SNP <- as.character(xtyi$SNP)
yt.xtyi <- xtyi[(xtyi$SNP %in% snp.subset) & (xtyi$SNP %in%
prs.sub$sid), ]
yt.xtyi.xt <- yt.xtyi[yt.xtyi$TEST == "ADD", ]
yt.xtyi.yi <- yt.xtyi[yt.xtyi$TEST == "PRS", ]
inter <- read.table(paste0(root.dir, inter.files[i]), header = T)
inter$SNP <- as.character(inter$SNP)
inter <- inter[inter$TEST == "ADDxPRS", ]
yt.inter <- inter[(inter$SNP %in% snp.subset) & (inter$SNP %in%
prs.sub$sid), ]
# order all rows
yt.xtyi.xt <- yt.xtyi.xt[order(yt.xtyi.xt$SNP), ]
yt.xtyi.yi <- yt.xtyi.yi[order(yt.xtyi.yi$SNP), ]
yt.inter <- yt.inter[order(yt.inter$SNP), ]
prs.sub <- prs.sub[order(prs.sub$sid), ]
# check direction
prs.sub$nt1 <- as.character(prs.sub$nt1)
yt.xtyi.xt$A1 <- as.character(yt.xtyi.xt$A1)
yt.inter$A1 <- as.character(yt.inter$A1)
if (sum(prs.sub$nt1 != yt.xtyi.xt$A1) != 0 | sum(prs.sub$nt1 !=
yt.inter$A1) != 0) {
print("Direction does not match. Exit!")
quit()
}
yt.xtyi.xt.mean.std <- getMeanStd(yt.xtyi.xt$SNP, yt.xtyi.xt$P,
yt.xtyi.xt$OR, "Y~Gi+I (Gi)")
yt.xtyi.yi.mean.std <- getMeanStd(yt.xtyi.yi$SNP, yt.xtyi.yi$P,
yt.xtyi.yi$OR, "Y~Gi+I (I)")
yt.inter.mean.std <- getMeanStd(yt.inter$SNP, yt.inter$P,
yt.inter$OR, "Y~Gi*I")
prs.sub.mean.std <- data.frame(SNP = prs.sub$sid, Mean = prs.sub$ldpred_beta,
Std = 0, Type = "I~Gi")
# create data frame for plot
df <- rbind(yt.xtyi.xt.mean.std, yt.xtyi.yi.mean.std, prs.sub.mean.std,
yt.inter.mean.std)
ratio <- max(1, nrow(yt.inter)/40)
cat
p <- ggplot(df) + geom_point(aes(x = SNP, y = Mean)) + geom_errorbar(aes(x = SNP,
ymin = Mean - 1.96 * Std, ymax = Mean + 1.96 * Std),
colour = "black", width = 0.1) + geom_hline(yintercept = 0,
color = "red") + facet_grid(. ~ Type, scales = "free_x") +
coord_flip() + theme(axis.text.x = element_text(angle = 90,
hjust = 1))
p2 <- ggplot(yt.inter) + geom_bar(aes(x = SNP, y = -log10(P)),
stat = "identity") + coord_flip() + ggtitle("Interaction P-value")
subchunkify(p, ratio)
subchunkify(p2, ratio)
cat("
")
inter.plus.gwas.pval <- cbind(yt.inter, yt.xtyi.xt$P)
colnames(inter.plus.gwas.pval) <- c(colnames(yt.inter), "GWAS.P")
pander(inter.plus.gwas.pval[order(inter.plus.gwas.pval$P,
decreasing = F), ])
cat("
")
cat("
")
}
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.6756 | -2.492 | 0.0127 | 6.231e-06 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.685 | -2.417 | 0.01566 | 8.586e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.6909 | -2.36 | 0.01827 | 6.713e-06 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 0.589 | -2.341 | 0.01922 | 2.471e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.3 | 1.864 | 0.06238 | 3.825e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.752 | -1.721 | 0.08527 | 2.941e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.6965 | -1.665 | 0.09588 | 3.649e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.7983 | -1.573 | 0.1157 | 7.677e-06 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 1.237 | 1.509 | 0.1314 | 3.405e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 1.235 | 1.498 | 0.1342 | 3.378e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.244 | 1.36 | 0.1737 | 3.514e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.8332 | -1.353 | 0.1759 | 4.308e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.8618 | -1.158 | 0.247 | 4.714e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.129 | 0.927 | 0.3539 | 3.287e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.123 | 0.9074 | 0.3642 | 1.46e-06 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.122 | 0.8902 | 0.3734 | 1.484e-09 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.289 | 0.8606 | 0.3895 | 3.316e-06 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.129 | 0.7636 | 0.4451 | 1.187e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.098 | 0.7272 | 0.4671 | 6.903e-14 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.098 | 0.7234 | 0.4694 | 9.865e-09 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.109 | 0.6558 | 0.5119 | 2.342e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9204 | -0.6441 | 0.5195 | 7.865e-11 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.922 | -0.6308 | 0.5282 | 2.255e-07 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.084 | 0.5678 | 0.5702 | 2.722e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.076 | 0.5334 | 0.5938 | 1.109e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.057 | 0.4384 | 0.6611 | 3.421e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.055 | 0.4172 | 0.6765 | 7.34e-13 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9478 | -0.4128 | 0.6798 | 2.142e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.054 | 0.4076 | 0.6836 | 1.737e-12 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.053 | 0.4027 | 0.6872 | 1.255e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.053 | 0.3995 | 0.6895 | 6.473e-13 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9568 | -0.3431 | 0.7315 | 5.374e-10 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9619 | -0.3025 | 0.7623 | 1.312e-09 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9644 | -0.1788 | 0.8581 | 3.25e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 0.975 | -0.1769 | 0.8596 | 4.221e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9775 | -0.1569 | 0.8753 | 1.262e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 1.011 | 0.07838 | 0.9375 | 1.416e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 0.9935 | -0.04757 | 0.9621 | 1.378e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.6892 | -2.406 | 0.01611 | 6.235e-06 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 0.5882 | -2.377 | 0.01745 | 2.447e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.6978 | -2.338 | 0.01937 | 8.597e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.7041 | -2.278 | 0.02273 | 6.726e-06 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.694 | -1.705 | 0.08818 | 3.635e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.7603 | -1.677 | 0.09356 | 2.921e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.26 | 1.667 | 0.09556 | 3.75e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.8265 | -1.433 | 0.1517 | 4.227e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.8174 | -1.425 | 0.1542 | 7.843e-06 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 1.209 | 1.369 | 0.1709 | 3.342e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 1.207 | 1.355 | 0.1754 | 3.317e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.227 | 1.291 | 0.1968 | 3.513e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.137 | 1.01 | 0.3123 | 1.489e-09 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.136 | 1.009 | 0.3132 | 1.457e-06 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.8812 | -1 | 0.3171 | 4.731e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.129 | 0.9449 | 0.3447 | 3.319e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.118 | 0.8767 | 0.3807 | 6.881e-14 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.145 | 0.8671 | 0.3859 | 1.176e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9002 | -0.8268 | 0.4083 | 7.927e-11 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.111 | 0.8252 | 0.4092 | 9.87e-09 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.269 | 0.8226 | 0.4107 | 3.259e-06 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9147 | -0.7014 | 0.483 | 2.261e-07 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.113 | 0.6864 | 0.4925 | 2.337e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.081 | 0.61 | 0.5418 | 1.24e-13 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.08 | 0.6087 | 0.5427 | 7.32e-13 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.083 | 0.5923 | 0.5536 | 1.124e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.078 | 0.5917 | 0.554 | 1.732e-12 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.078 | 0.5903 | 0.555 | 6.458e-13 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.077 | 0.5301 | 0.5961 | 2.747e-05 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.941 | -0.4787 | 0.6322 | 5.392e-10 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9428 | -0.4614 | 0.6445 | 2.201e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9463 | -0.4349 | 0.6636 | 1.317e-09 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.046 | 0.359 | 0.7196 | 3.375e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9611 | -0.199 | 0.8423 | 3.249e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9747 | -0.1793 | 0.8577 | 1.269e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 0.9861 | -0.09936 | 0.9209 | 4.173e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 1.008 | 0.05463 | 0.9564 | 1.422e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.006 | 0.04582 | 0.9635 | 1.454e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 0.627 | -2.3 | 0.02146 | 2.365e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.7442 | -2.112 | 0.03473 | 6.285e-06 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.7498 | -2.069 | 0.03858 | 8.665e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.7573 | -1.995 | 0.0461 | 6.79e-06 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.7194 | -1.691 | 0.09087 | 3.565e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.8328 | -1.515 | 0.1299 | 3.983e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.8041 | -1.468 | 0.1421 | 2.865e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.144 | 1.17 | 0.2421 | 1.498e-09 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.8789 | -1.117 | 0.2638 | 8.048e-11 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.137 | 1.113 | 0.2658 | 1.457e-06 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 1.147 | 1.091 | 0.2751 | 3.571e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.135 | 1.09 | 0.2758 | 6.807e-14 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.162 | 1.058 | 0.2899 | 1.129e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.123 | 0.9969 | 0.3188 | 1.202e-13 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.153 | 0.9923 | 0.321 | 3.502e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.8828 | -0.9631 | 0.3355 | 8.289e-06 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.116 | 0.9517 | 0.3412 | 7.259e-13 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.115 | 0.9408 | 0.3468 | 9.849e-09 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 1.125 | 0.94 | 0.3472 | 3.189e-05 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.114 | 0.9323 | 0.3512 | 6.409e-13 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.114 | 0.9285 | 0.3531 | 3.365e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 1.123 | 0.9196 | 0.3578 | 3.168e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.111 | 0.9103 | 0.3627 | 1.728e-12 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.095 | 0.7419 | 0.4581 | 1.177e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.109 | 0.7366 | 0.4614 | 2.362e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9213 | -0.7084 | 0.4787 | 2.289e-07 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9241 | -0.6838 | 0.4941 | 5.426e-10 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.189 | 0.6588 | 0.51 | 3.138e-06 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9299 | -0.6306 | 0.5283 | 1.319e-09 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 0.9354 | -0.5836 | 0.5595 | 4.843e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9396 | -0.5399 | 0.5893 | 2.369e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.053 | 0.4138 | 0.6791 | 2.817e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.036 | 0.2904 | 0.7715 | 1.706e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9666 | -0.2614 | 0.7938 | 1.274e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9559 | -0.2479 | 0.8042 | 3.235e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.019 | 0.1625 | 0.8709 | 3.273e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.012 | 0.09319 | 0.9258 | 4.153e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9942 | -0.04525 | 0.9639 | 1.426e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 0.7796 | -1.717 | 0.08594 | 2.235e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.8642 | -1.441 | 0.1496 | 6.418e-06 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.8654 | -1.432 | 0.1521 | 8.793e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.8744 | -1.329 | 0.184 | 6.9e-06 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.8322 | -1.312 | 0.1896 | 3.418e-05 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.8983 | -1.231 | 0.2182 | 3.721e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.129 | 1.187 | 0.2354 | 1.039e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.098 | 1.114 | 0.2653 | 1.19e-13 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9148 | -1.079 | 0.2805 | 8.178e-11 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.087 | 1.017 | 0.3093 | 1.514e-09 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.087 | 0.9948 | 0.3198 | 7.234e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.085 | 0.9794 | 0.3274 | 6.386e-13 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.08 | 0.9235 | 0.3557 | 1.762e-12 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.078 | 0.8956 | 0.3705 | 6.751e-14 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.071 | 0.8311 | 0.4059 | 1.486e-06 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.073 | 0.8047 | 0.421 | 1.273e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.082 | 0.7806 | 0.4351 | 2.491e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.9216 | -0.771 | 0.4407 | 2.795e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.061 | 0.7169 | 0.4734 | 9.834e-09 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.059 | 0.6862 | 0.4926 | 3.296e-05 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9475 | -0.6534 | 0.5135 | 5.519e-10 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9523 | -0.5922 | 0.5537 | 1.319e-09 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.052 | 0.5772 | 0.5638 | 2.151e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9626 | -0.463 | 0.6434 | 2.58e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9584 | -0.4585 | 0.6466 | 1.24e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.039 | 0.4204 | 0.6742 | 4.468e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 0.9694 | -0.3735 | 0.7088 | 2.384e-07 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.068 | 0.3395 | 0.7342 | 3.088e-06 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9714 | -0.3131 | 0.7542 | 1.393e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 0.9751 | -0.2689 | 0.788 | 8.699e-06 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9694 | -0.2315 | 0.8169 | 3.151e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.019 | 0.216 | 0.829 | 2.85e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9843 | -0.1913 | 0.8483 | 3.24e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.01 | 0.09561 | 0.9238 | 3.436e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 1.008 | 0.08552 | 0.9318 | 3.108e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 1.005 | 0.05938 | 0.9526 | 3.092e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.004 | 0.04957 | 0.9605 | 5.207e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9992 | -0.008622 | 0.9931 | 3.473e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9179 | -1.051 | 0.2934 | 8.77e-06 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9188 | -1.035 | 0.3006 | 6.446e-06 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.088 | 1.017 | 0.3093 | 9.873e-06 |
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.9369 | -0.9366 | 0.349 | 3.676e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9265 | -0.9363 | 0.3491 | 6.874e-06 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 0.9009 | -0.9091 | 0.3633 | 2.179e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.06 | 0.8739 | 0.3822 | 1.184e-13 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.06 | 0.8394 | 0.4012 | 1.306e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9513 | -0.7629 | 0.4455 | 8.06e-11 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.05 | 0.7312 | 0.4646 | 7.146e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.049 | 0.7218 | 0.4704 | 6.301e-13 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.9229 | -0.7203 | 0.4714 | 3.324e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.047 | 0.6569 | 0.5112 | 2.313e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.044 | 0.6525 | 0.5141 | 1.776e-12 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9477 | -0.6524 | 0.5142 | 3.42e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.053 | 0.6372 | 0.524 | 2.615e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9574 | -0.6123 | 0.5404 | 3.514e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9565 | -0.6054 | 0.5449 | 1.203e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.038 | 0.5765 | 0.5643 | 1.513e-09 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.038 | 0.5183 | 0.6042 | 4.823e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9632 | -0.5108 | 0.6095 | 1.358e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.033 | 0.4898 | 0.6243 | 6.693e-14 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.032 | 0.487 | 0.6262 | 5.464e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9675 | -0.4647 | 0.6421 | 3.128e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.032 | 0.4636 | 0.6429 | 3.175e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9693 | -0.4391 | 0.6606 | 3.144e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9736 | -0.4077 | 0.6835 | 2.618e-05 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9751 | -0.3838 | 0.7012 | 5.505e-10 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.022 | 0.3262 | 0.7443 | 1.514e-06 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.979 | -0.3246 | 0.7455 | 1.299e-09 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.019 | 0.2866 | 0.7744 | 9.791e-09 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 0.9816 | -0.2215 | 0.8247 | 2.798e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 0.9855 | -0.2213 | 0.8249 | 3.318e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 1.016 | 0.2083 | 0.835 | 8.704e-06 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9836 | -0.1514 | 0.8797 | 3.072e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.007 | 0.1038 | 0.9173 | 2.446e-07 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 1.007 | 0.04511 | 0.964 | 3.147e-06 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 1.002 | 0.02946 | 0.9765 | 2.817e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.922 | -1.136 | 0.2559 | 3.556e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.07 | 0.9952 | 0.3197 | 5.545e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9415 | -0.8246 | 0.4096 | 3.477e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.061 | 0.8239 | 0.41 | 2.55e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9335 | -0.8156 | 0.4147 | 8.413e-06 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.057 | 0.8069 | 0.4198 | 1.111e-13 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9353 | -0.7955 | 0.4263 | 3.567e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9375 | -0.7626 | 0.4457 | 6.227e-06 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.052 | 0.7049 | 0.4808 | 1.335e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9423 | -0.7038 | 0.4816 | 6.58e-06 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9503 | -0.6774 | 0.4982 | 1.214e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.046 | 0.6576 | 0.5108 | 6.82e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.046 | 0.6494 | 0.5161 | 6.013e-13 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9559 | -0.6189 | 0.536 | 3.077e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 1.049 | 0.6181 | 0.5365 | 8.62e-06 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9575 | -0.5952 | 0.5517 | 3.092e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9563 | -0.5941 | 0.5524 | 1.374e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9615 | -0.5808 | 0.5614 | 2.65e-05 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.05 | 0.5701 | 0.5686 | 9.55e-06 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.045 | 0.5295 | 0.5965 | 2.732e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.037 | 0.5222 | 0.6015 | 1.744e-12 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9672 | -0.4983 | 0.6183 | 7.453e-11 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.034 | 0.4862 | 0.6269 | 2.444e-07 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.025 | 0.3529 | 0.7242 | 3.046e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.021 | 0.3105 | 0.7562 | 6.47e-14 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.023 | 0.3087 | 0.7576 | 5.071e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 0.9796 | -0.2786 | 0.7805 | 2.785e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.024 | 0.2762 | 0.7824 | 2.826e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9766 | -0.2079 | 0.8353 | 3.083e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9705 | -0.1826 | 0.8551 | 3.179e-06 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.9816 | -0.1622 | 0.8711 | 3.209e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.9902 | -0.1455 | 0.8843 | 9.591e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9917 | -0.1233 | 0.9019 | 5.179e-10 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 0.9871 | -0.1105 | 0.912 | 2.108e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.993 | -0.1047 | 0.9166 | 1.516e-06 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.006 | 0.08698 | 0.9307 | 3.348e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.005 | 0.07814 | 0.9377 | 1.484e-09 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9954 | -0.06814 | 0.9457 | 1.212e-09 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.8824 | -1.502 | 0.133 | 3.449e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.11 | 1.315 | 0.1887 | 5.415e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 1.105 | 1.105 | 0.2691 | 8.347e-06 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.09 | 1.018 | 0.3085 | 2.364e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.9337 | -0.8689 | 0.3849 | 2.543e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.071 | 0.8492 | 0.3958 | 1.051e-13 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.06 | 0.7237 | 0.4692 | 6.559e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.059 | 0.7125 | 0.4762 | 5.787e-13 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9427 | -0.6879 | 0.4915 | 3.44e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.9485 | -0.5993 | 0.549 | 1.227e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.047 | 0.5776 | 0.5635 | 2.409e-07 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9455 | -0.5696 | 0.569 | 7.953e-06 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.048 | 0.5568 | 0.5777 | 1.339e-05 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.046 | 0.5559 | 0.5783 | 1.703e-12 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.9561 | -0.5098 | 0.6102 | 1.393e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.052 | 0.507 | 0.6122 | 2.9e-05 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9529 | -0.4901 | 0.6241 | 6.204e-06 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 0.9588 | -0.4821 | 0.6297 | 2.773e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9607 | -0.4688 | 0.6392 | 2.982e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9549 | -0.4665 | 0.6408 | 5.916e-06 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9626 | -0.4457 | 0.6558 | 2.997e-05 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.9212 | -0.4229 | 0.6724 | 3.271e-06 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9466 | -0.4155 | 0.6778 | 3.261e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.041 | 0.4139 | 0.6789 | 2.765e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9704 | -0.3835 | 0.7013 | 6.918e-11 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.029 | 0.3586 | 0.7199 | 3.265e-05 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.029 | 0.3531 | 0.724 | 6.363e-14 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 0.9677 | -0.3346 | 0.7379 | 3.711e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.9739 | -0.3328 | 0.7393 | 9.44e-09 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.024 | 0.2962 | 0.7671 | 2.957e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 0.9839 | -0.2061 | 0.8367 | 1.507e-06 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.029 | 0.2054 | 0.8373 | 2.058e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.018 | 0.2022 | 0.8398 | 5.199e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9859 | -0.1805 | 0.8567 | 1.457e-09 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 1.007 | 0.08293 | 0.9339 | 1.142e-09 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 1.006 | 0.05887 | 0.9531 | 9.499e-06 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 1.002 | 0.02257 | 0.982 | 4.891e-10 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 1.002 | 0.01171 | 0.9907 | 3.114e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.8313 | -1.857 | 0.06335 | 3.519e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 1.186 | 1.581 | 0.1139 | 8.254e-06 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.13 | 1.286 | 0.1984 | 5.217e-05 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.8871 | -1.266 | 0.2054 | 2.291e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.106 | 0.988 | 0.3232 | 1.868e-05 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.092 | 0.9039 | 0.366 | 6.465e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.09 | 0.888 | 0.3745 | 5.707e-13 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.089 | 0.8819 | 0.3778 | 1.044e-13 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.076 | 0.7491 | 0.4538 | 1.676e-12 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.8555 | -0.6629 | 0.5074 | 3.442e-06 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.061 | 0.61 | 0.5419 | 6.293e-14 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9396 | -0.6043 | 0.5456 | 3.523e-05 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 0.939 | -0.601 | 0.5479 | 2.773e-05 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.052 | 0.5289 | 0.5969 | 2.357e-07 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9546 | -0.4939 | 0.6214 | 6.555e-11 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.048 | 0.4904 | 0.6239 | 3.238e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.048 | 0.4652 | 0.6418 | 1.242e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.936 | -0.4268 | 0.6695 | 3.539e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9577 | -0.4213 | 0.6735 | 3.043e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.96 | -0.3982 | 0.6905 | 3.06e-05 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.958 | -0.3685 | 0.7125 | 7.758e-06 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9618 | -0.3345 | 0.738 | 6.04e-06 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.032 | 0.3274 | 0.7434 | 2.962e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.038 | 0.3037 | 0.7614 | 2.899e-05 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 0.972 | -0.2688 | 0.7881 | 1.196e-05 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.041 | 0.2395 | 0.8107 | 2.139e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9728 | -0.2358 | 0.8136 | 5.757e-06 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 0.9725 | -0.2329 | 0.8159 | 9.826e-06 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.022 | 0.2061 | 0.8367 | 5.291e-05 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 0.983 | -0.1622 | 0.8711 | 1.358e-05 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.018 | 0.1539 | 0.8777 | 3.689e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 1.015 | 0.1328 | 0.8943 | 2.719e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 0.9874 | -0.1325 | 0.8946 | 9.139e-09 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 0.9899 | -0.1069 | 0.9149 | 1.399e-09 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 1.007 | 0.06867 | 0.9453 | 1.094e-09 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.005 | 0.04821 | 0.9615 | 1.479e-06 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 1.001 | 0.0147 | 0.9883 | 4.671e-10 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.9992 | -0.004684 | 0.9963 | 3.223e-05 |
| CHR | SNP | BP | A1 | TEST | NMISS | OR | STAT | P | GWAS.P | |
|---|---|---|---|---|---|---|---|---|---|---|
| 9 | 1 | rs2883720 | 0 | T | ADDxPRS | 4864 | 0.7929 | -2.027 | 0.04262 | 3.856e-05 |
| 48 | 6 | rs6922269 | 0 | A | ADDxPRS | 4864 | 1.237 | 1.72 | 0.08542 | 7.808e-06 |
| 126 | 16 | rs7199903 | 0 | T | ADDxPRS | 4864 | 0.8528 | -1.453 | 0.1463 | 2.059e-05 |
| 132 | 17 | rs6502872 | 0 | T | ADDxPRS | 4864 | 1.13 | 1.118 | 0.2635 | 5.04e-05 |
| 105 | 9 | rs1333048 | 0 | A | ADDxPRS | 4864 | 1.122 | 1.028 | 0.3038 | 1.133e-13 |
| 96 | 9 | rs4977574 | 0 | A | ADDxPRS | 4864 | 1.118 | 0.9971 | 0.3187 | 6.748e-13 |
| 99 | 9 | rs2891168 | 0 | A | ADDxPRS | 4864 | 1.116 | 0.9809 | 0.3267 | 5.952e-13 |
| 3 | 1 | rs10914783 | 0 | A | ADDxPRS | 4864 | 0.7766 | -0.9307 | 0.352 | 3.579e-06 |
| 102 | 9 | rs1333042 | 0 | A | ADDxPRS | 4864 | 1.099 | 0.8417 | 0.3999 | 1.709e-12 |
| 93 | 9 | rs6475606 | 0 | C | ADDxPRS | 4864 | 1.092 | 0.7948 | 0.4267 | 6.444e-14 |
| 147 | 21 | rs2838756 | 0 | C | ADDxPRS | 4864 | 0.9102 | -0.7753 | 0.4382 | 2.767e-05 |
| 87 | 9 | rs10965219 | 0 | G | ADDxPRS | 4864 | 0.9229 | -0.7349 | 0.4624 | 6.687e-11 |
| 135 | 19 | rs7250581 | 0 | A | ADDxPRS | 4864 | 0.9033 | -0.7327 | 0.4637 | 1.029e-05 |
| 21 | 2 | rs2943634 | 0 | A | ADDxPRS | 4864 | 1.076 | 0.6283 | 0.5298 | 1.375e-05 |
| 150 | 22 | rs688034 | 0 | T | ADDxPRS | 4864 | 1.064 | 0.5397 | 0.5894 | 1.142e-05 |
| 138 | 20 | rs6071467 | 0 | G | ADDxPRS | 4864 | 0.9401 | -0.5199 | 0.6031 | 3.819e-05 |
| 111 | 10 | rs7910044 | 0 | A | ADDxPRS | 4864 | 1.059 | 0.5144 | 0.607 | 3.334e-05 |
| 60 | 9 | rs523096 | 0 | G | ADDxPRS | 4864 | 1.054 | 0.4722 | 0.6368 | 1.479e-06 |
| 123 | 16 | rs12716963 | 0 | G | ADDxPRS | 4864 | 1.064 | 0.4556 | 0.6487 | 3.503e-05 |
| 141 | 20 | rs6071469 | 0 | C | ADDxPRS | 4864 | 0.9474 | -0.4556 | 0.6487 | 3.274e-05 |
| 144 | 20 | rs2093154 | 0 | T | ADDxPRS | 4864 | 0.9509 | -0.4245 | 0.6712 | 3.294e-05 |
| 54 | 8 | rs16872634 | 0 | C | ADDxPRS | 4864 | 1.044 | 0.3502 | 0.7262 | 5.076e-05 |
| 30 | 4 | rs11939435 | 0 | G | ADDxPRS | 4864 | 0.9409 | -0.3451 | 0.73 | 3.516e-05 |
| 81 | 9 | rs564398 | 0 | C | ADDxPRS | 4864 | 1.035 | 0.3083 | 0.7579 | 9.238e-09 |
| 66 | 9 | rs10757264 | 0 | G | ADDxPRS | 4864 | 1.031 | 0.2809 | 0.7788 | 2.288e-07 |
| 12 | 1 | rs2133189 | 0 | C | ADDxPRS | 4864 | 1.03 | 0.2404 | 0.8101 | 1.334e-05 |
| 120 | 14 | rs10431700 | 0 | G | ADDxPRS | 4864 | 1.026 | 0.2311 | 0.8172 | 2.965e-05 |
| 84 | 9 | rs7865618 | 0 | G | ADDxPRS | 4864 | 1.021 | 0.1852 | 0.853 | 1.403e-09 |
| 78 | 9 | rs10965215 | 0 | A | ADDxPRS | 4864 | 0.9832 | -0.1551 | 0.8768 | 4.765e-10 |
| 15 | 1 | rs17465637 | 0 | T | ADDxPRS | 4864 | 1.018 | 0.1474 | 0.8828 | 1.173e-05 |
| 75 | 9 | rs7049105 | 0 | G | ADDxPRS | 4864 | 0.9847 | -0.1404 | 0.8883 | 1.118e-09 |
| 42 | 5 | rs565928 | 0 | T | ADDxPRS | 4864 | 0.9821 | -0.1356 | 0.8921 | 6.334e-06 |
| 39 | 5 | rs436495 | 0 | A | ADDxPRS | 4864 | 0.9835 | -0.125 | 0.9005 | 8.138e-06 |
| 117 | 12 | rs2167512 | 0 | A | ADDxPRS | 4864 | 1.02 | 0.1043 | 0.9169 | 2.24e-05 |
| 114 | 12 | rs2398486 | 0 | T | ADDxPRS | 4864 | 0.9836 | -0.08951 | 0.9287 | 3.316e-05 |
| 18 | 2 | rs17018897 | 0 | G | ADDxPRS | 4864 | 1.01 | 0.07201 | 0.9426 | 2.941e-05 |
| 6 | 1 | rs599839 | 0 | G | ADDxPRS | 4864 | 0.9917 | -0.06296 | 0.9498 | 2.604e-05 |
| 36 | 5 | rs449650 | 0 | T | ADDxPRS | 4864 | 0.9981 | -0.01434 | 0.9886 | 6.014e-06 |